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While two-level systems (TLSs) are ubiqitous in solid state systems, microscopic understanding of their nature remains an outstanding problem. Conflicting phenomenological models are used to describe TLSs in seemingly similar materials when probed with different experimental techniques. Specifically, bulk measurements in amorphous solids have been interpreted using the model of a tunneling atom or group of atoms, whereas TLSs observed in the insulating barriers of Josephson junction qubits have been understood in terms of tunneling of individual electrons. Motivated by recent experiments studying TLSs in Josephson junctions, especially the effects of elastic strain on TLS properties, we analyzed the interaction of the electronic TLS with phonons. We demonstrated that strong polaronic effects led to dramatic changes in TLS properties. Our model gave a quantitative understanding of the TLS relaxation and dephasing as probed in Josephson junction qubits, while providing an alternative interpretation of bulk experiments. We demonstrated that a model of polaron dressed electronic TLS led to estimates for the density and distribution of parameters of TLSs consistent with bulk experiments in amorphous solids. That model explains such surprising observations of recent experiments as the existence of minima in the energy of some TLSs as a function of strain and makes concrete predictions for the character of TLS dephasing near such minima. We argued that better understanding of the microscopic nature of TLSs could be used to improve properties of quantum devices, from an enhancement of relaxation time of TLSs to creating new types of strongly interacting optomechanical systems.

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